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biology exam I

Terms

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The formation of Earth
4.5 billion years ago
Origin of life on earth
3.75 billion years ago
First invertebrates + Cambrian Explosion of Life
600 million years ago
First fish
500 million years ago
First land plants and animals
400 million years ago
Permian Extinction
250 million years ago
Dinosaurs
230 million years ago

First mammals
200 million years ago
First Hominoids
500,000 years ago
First modern humans
70-200,000 years ago
spontaneous generation
The theory that life just sort of appeared from various objects; such as frogs sprouting from wet soil.
Francesco Redi
1668, tested and disproved the theory of spontaneous generation with meat in jars + flies
vitalism
Life processes determined by laws of physical universe in combination with a vital force. (i.e. the soul)
Early Earth atmosphere
Hydrogen (H2), Methane (CH4), Ammonia (NH4), Water, Nitrogen (N2), small amounts of carbon dioxide/monoxide, and hydrogen sulfide
Today's atmosphere
Nitrogen (N2), Oxygen (O2), carbon dioxide (CO2), water (H2O)

organic
Referrs to compounds that contain carbon
Stanley Miller and Harold Urey
University of Chicago, 1953 - recreated the primordial atmosphere and used electricity to successfully spark inorganic compounds to create organic compounds.
biology
the study and structure of organisms
organisms
all living things
homeostasis
a natural balance that is maintained for optimal function
the scientific method
question > research > hypothesis > procedure/method > data > observations > conclusion
hypothesis
Not a question, but a preliminary explanation for a question; an educated prediction or guess.
theory
A well accepted conclusion with support from MULTIPLE experiments and multiple sources.
Chemistry
the study of the composition, properties, and behavior of natural substances. The scientific study of matter.
orbitals
The circular paths that electrons go in to orbit the nucleus
valence electrons
Electrons that occupy the outermost orbital
ion
Electrically charged atom; proton and electron numbers are not equal
Atomic number
Number of protons in an atom
nuclear reactions
When the number of protons in an atom change
isotope
Different number of neutrons in a particular atom.
compound
A substance made of more than one element; combined with the power of a bond.
bond
sharing valence electrons in the outer orbital.
covalent bond
Sharing of electrons; creates molecules
ionic bond
Transfer of electrons; not an equal sharing of electrons. Stronger than covalent bonds, but easier to break. One side has a charge, and the other doesn't.
energy
the ability to do work
chemical reaction
an energetic process of chemical change. all reactions have reactants and products.
reactants and products
starting materials and ending materials of chemical reactions
enzymes
biological catalysts to help reactions go faster and more efficiently.
Unique properties of water
1. Cohesion
2. Adhesion
3. Capillarity
4. High surface tension
5. Solid form is less dense than liquid
6. High specific heat




Hydrogen bond
Electrons are not shared; ie in water. creates a polar molecule
polar molecule
molecule with a negative and positive pole, partially charged; not an ion
Carbon
the fundamental building block of biological molecules; four valence electrons; can create up to four different bonds per atom!
Hydrocarbon
a purely hydrogen and carbon molecule; nonpolar and hydrophobic.
macromolecules
Carbon-rich molecules in the foods we eat
Functional groups of organic macromolecules
Lipids, Carbohydrates, Proteins, and Nucleic Acids. composed of nitrogen, phosphorus, sulfur, carbon, oxygen, and hydrogen.
metabolism
how the body is able to process and use energy input
polymers
What most all food is made up of. Chemical units made up of many monomers and dimers.
hydrolysis reactions
water molecule slices a larger molecule; gain water in the process; is how digestive processes break down polymers into monomers.
condensation reactions
process of monomers being recombined into polymers; lose water in the process.
Proteins
Polar, made of amino acids and polypeptides.
polypeptides
Polymer forms of proteins.
amino acids
Monomer units of proteins that make up polymer polypeptides. Two amino acids bonded together are usually messengers called hormones.
Carbohydrates
Polar, made of polymers called polysaccharides and monomer monosaccharides.
polysaccharides
polymer carbohydrates; a type of sugar. digested very slowly over time to give a long, steady stream of energy.
monosaccharides
monomer carbohydrates; easier to digest
Lipids
Fats, oils, waxes. Nonpolar and repel water. Do not have true monomer units - they are long hydrophobic chains; can be saturated or unsaturated with hydrogen atoms.
Nucleic Acids
Stuff our DNA is made of.
nucleotides
monomer units of nucleic acids. Composed of a pentose sugar, phosphate group, and a nitrogenous base
pentose sugar
5 carbon sugar
nitrogenous base
A functional group with nitrogen; with four basic bases: A T C G
Cells
basic structural unit of organisms
The cell theory
1858.
1. All organisms consist of one or more cells.
2. The cell is the basic unit of structure
3. All cells arise only from preexisting cells


Invention of the microscope
Von Leeuwenhoek; end of the 17th century. 4x zoom and very distorted; eventually refined to have 300x magnification.
Micrographia image
1665, Robert Hooke; after looking at thinly sliced cork under a microscope. He described what he saw as "cells" and the word stuck despite cork actually being the cell walls of dead plant tissue.
Light microscope
Uses light to look at thinly sliced, stained specimens so that light passes through them. 1500x magnification.
electron microscope
1930s. Two types - Transmission Electron Microscope and Scanning Electron Microscope
TEM
Transmission Electron Microscope
SEM
Scanning Electron Microscope, 1950s
Basic components of cells
1. Cell membrane
2. Cytoplasm (goo inside the cell)
3. DNA

Prokaryotic cells
Simpler, smaller cells without nuclei or membrane-bound organelles. DNA floats freeform in the cytoplasm as well as ribosomes.
Eukaryotic cells
Larger cells that contain membrane-bound structures called organelles, like little organs.
Animal cell
A eukaryotic cell, with mitochondrion, cytoplasm, plasma membrane, endoplasmic reticulum (rough and smooth), ribosomes, golgi complex, nucleus, lysosome, cytoskeleton.
Mitochondrion
Kidney shaped organelles that have a double membrane; they generate energy for the cell and perform lots of metabolic reactions
Cytoplasm
The jell-o like goop that fills in the cell and holds everything together
Plasma membrane
Holds the cell in shape, selectively permeable (can select what is able to enter and exit the cell)
Endoplasmic reticulum (ER)
"inside plasma", a reticulated surface. Two types - rough and smooth. Rough ER has ribosomes embedded in the surface, responsible for packaging newly synthesized proteins. Smooth ER synthesizes and packages lipids.
Ribosomes
little balls floating through the cytoplasm.
Golgi complex
"Post office" of the cell. Recieves various vesicles that contain substances secreted by other organelles. Sorts, modifies, repackages the substances and prepares them for cell exit.
Nucleus
Central region of the cell, containing the DNA and RNA
nuclear envelope
Double membrane that protects the nucleus
nuclear pores
Holes in the nuclear envelope used for exchange between the nucleus and the cytoplasm
chromatin
DNA in uncondensed form in the nucleus
nucleolus
The "nucleus" of the nucleous - the wad of self attracting chromatin
Lysosome
Digestive organ, containing hydrolytic enzymes, breaks down food and digests it.
vacuole
A way to transport large molecules into the cell; the cell membrane folds around the molecule and pinches it off to make a little transport bubble for it.
cytoskeleton
Holds cell shape together, the backbone of the cell: made of microtubules and microfilaments.
microtubules
Used for various purposes, such as creation of centrioles (for mitosis), and projections on the outside of the cell like scilia or flagella.
microfilaments
Long intertwined chains that form the bulk of the "skeleton" of the cell.
Plant cell
A eukaryotic cell, very much like an animal cell, but with chloroplast, central vacuole, cell wall, and plasodesmata
Chloroplast
Contain chlorophyll; used for photosynthesis, can also store sugars and starches.
Central vacuole
Filled with water and nutrients for the cell; partly provides rigidity of the plants, when the plant needs a lot of water it uses this and it causes the cells to deflate and "wilt"
Cell wall
Has a cell membrane, but the next layer is a rigid wall; lots of nutrition for animals that ingest it, including fiber called cellulose.
Plasmodesmata
pores inside cell walls
composition of cell membrane
Phospholipid. Lipid makes the hydrophobic tail on the inside, and the phosphorous head is the hydrophilic head on the outside. Structure helps it maintain homeostasis.
aquaporins
Special channels in the cell membrane that allow water to flow in rapidly.
Passive transport
1. Does not require energy from cell
2. From areas of high to low concentration (concentration gradient)
3. Simple diffusion is most basic type
4. Osmosis
5. Facilitated diffusion



osmosis
water-specific simple diffusion
facilitated diffusion
diffusion in which special transport proteins are required in the cell membrane, like special tunnels
Cell active transport
1. requires energy from cell
2. against concentration gradient; low to high
3. Typically uses ATP
4. Special protein pumps


ATP
adenosine triphosphate, used in active transport
cell membrane pumps
Used in active transport; do not activate without ATP input. They break a phosphorus molecule off of ATP to turn it into ADP and generate energy for the pump.
Bulk flow
Uses vesicles for endocytosis (entering) or exocytosis (exiting). For extremely large molecules.
catabolism
digestion of large molecules into simpler subunits.
anabolism
building up of larger molecules from smaller ones.
Enzyme traits
1. Biological catalysts
2. Substrate specific (particular to one type of substance)
3. Active site, similar to a lock and key

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