Biology 111- Week 6- Organic Polymers
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- What are carbohydrates?
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fuel and building material:
sugars and their polymers - What is a polymer?
- a long molecule consisting of many similar or identical building blocks linked by covalent bonds (like a train with a chain of cars)
- What is a monosaccharide?
- a single sugar, or simple sugar, with 3 to 7 carbon chains
- What are characteristics of monosaccharides?
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*crystalline, ie. sugar, table salt
*water soluble, because it's charged
*sweet
*absorbed directly into the bloodstream
*a quick source of energy, because they absorb directly into the bloodstream - What is a monomer?
- it's a monosaccharide that is the simplest recognizable form of a molecule
- What is glucose?
- the most common monosaccharide
- What are the isomers of glucose?
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they are hexose (six-sugars) and include:
galactose-aldehyde sugar
fructose-ketone sugar - How is it possible to know how many carbons each simple sugar has?
-
the info is in the name:
-ose means sugar
the prefix will have the number
For example: triose (three sugar) and pentose (five sugar) - What is the -ose ratio?
- 1:2:1
- What are the sources of diversity for simple sugars?
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*the location of the carbonyl group
*the size of the carbon chain
*spatial arrangement of their parts around asymmetric carbons (a carbon attached to four different kinds of covalent partners) - What are disaccharides?
- two monosaccharides joined by a glycosidic linkage (a covalent bond formed between two monosaccharides by a dehydration rxn- remember dehydration synthesis!)
- glucose + glucose= ?
- maltose (beer sugar, a disaccharide)
- glucose + galactose (aldehyde)= ?
- lactose (milk sugar) a disaccharide
- glucose + fructose (ketone)= ?
- sucrose (table sugar) a disaccharide
- What is a dimer?
- two monomers bound together by dehydration synthesis
- What are the characteristics of disaccharides?
-
*crystalline
*water soluble
*sweet
*hydrolysis is needed before absorption into the bloodstream (saliva has the chemical needed to break the bonds) - What is a macromolecule?
- thousands of covalently bonded atoms that form a molecular colossus weighing over 100,000 daltons (or a.m.u.s)
- What are polysaccharides?
- they are macromolecules, polymers with a few hundred to a few thousand monosaccharides all joined by glycosidic linkages
- What are characteristics of polysaccharides?
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*they are powder- not crystalline or sweet
*they are not soluble in water -think of corn starch, it just doesn't happen
*hydrolysis is needed before absorption
*they do not pass through cellular membranes
*they have repeating glucose subunits
*they have varible bond formations (structures) - What is starch?
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a polysaccharide:
a storage molecule in plants; poor, defenseless potatoes have them and that's what ppl eat - What is glycogen?
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a polysaccharide:
a branched, storage molecule in animals - What is cellulose?
-
a polysaccharide:
a structural component of plants with chains & chains & chains of molecules! Can't do anything with them! - What is chiton?
-
a polysaccharide:
a structural component of animals, fungi, and bugs (nitrogen is included with this carb; bugs shells harden when they come into contact with nitrogen) - What are lipids?
- diverse hydrophobic molecules that do not include polymers
- What are characteristics of lipids?
-
*they have a C:H:O ratio, not 1:2:1
*may contain other elements
*are a high energy source 2x that of carbs, but it takes more time to break down
*long term energy source
*digestion of them begins in the mouth, though most takes place in stomach and small intestines - What is a fat?
- it is constructed from two kinds of smaller molecules: glycerol and fatty acid chains
- What is saturated fat?
- a fat saturated with hydrogen that is solid at room temperature- this is the bad for you kind
- What is unsaturated fat?
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it's unsaturated with hydrogen but has many double bonds causing kinks in its tail that may affect properties if they're repositioned
these are liquid at room temperature - What are fats good for?
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*long term energy storage
*protection for organs
*insulations against temperature extremes - What are eicosanoyds?
- a type of lipid that cannot be synthesized by the body
- What are the types of eicosanoyds and what are they good for?
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prostaglandins- direct local cellular activities, ie. pyrogens
leukotrienes- coordinate tissue response, ie. they call phagocytes (white blood cells) to a skin cut where they eat and recycle invaders - What are steroids?
- lipids characterized by a carbon skeleton consisting of four fused rings
- What is cholesterol?
- a steroid that is a precursor from which other steroids are synthesized, also a common component of animal cell membranes
- What are steroids good for?
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*initiate sexual changes
*maintain tissue metabolism
*maintain mineral balance
*emulsify fats as bile salts - What are the bad things about steroids?
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*they're very hard to process
*too much is bad, like almost anything - What are phospholipids?
- similar to fats, they only have two fatty acid tails
- What characterizes phospholipids?
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*hydrophobic tails
*hydrophilic heads
*non-lipid group + phosphate group + glycerol + fatty acid - What are phospholipids good for?
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*they form semi-permeable membranes!
*they form micelles (transport vesicles), which surround other molecules for digestion
*they perform endocytosis- moving substances into a cell
*they perform exocytosis- moving substances out of a cell - What are the monomers that make up protein?
- amino acids
- What are the dimers of proteins?
- peptide bonds
- Proteins are the most abundant molecule in the body, making up how much of cells?
- 50% of the dry weight of cells
- The polymers of proteins are made up of what and are called what?
- monomers of amino acids and are called polypeptides
- How many amino acids make up proteins? How many cannot be synthesized by the body?
- 20+ amino acids, 8 of which cannot be synthesized by the body
- What are the structural levels of proteins?
- primary, secondary, tertiary, and quaternary
- What is the primary structural level of proteins characterized by?
- chains of amino acids linked by peptide bonds (ie. lyzosomes, though a small change in the chain can cause sickle cell disease)
- What is the secondary structural level of proteins characterized by?
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hydrogen bonds between amino acids, which can come in two forms:
*helix (hair is an example)
*pleated sheet (ie. spider web) - What is the tertiary structural level of proteins characterized by?
- disufide bonds (S-S) between amino acids, which contain sulfur in the R-group, and are superimposed on the secondary levels forming bridges
- What is the quaternary structural level of proteins characterized by?
- hydrogen bonds between polypeptide chains
- What do the 3rd and 4th structural levels depend on?
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*amino acid sequence
*ion concentration
*temperature
*pH - What is denature?
- when a protein unravels at high temperatures
- Proteins + large carbohydrates= ?
- proteoglycans -Remember, proteins may be bound to other molecules
- proteins + small carbohydrates= ?
- glycoproteins -Remember, proteins may bound to other molecules
- What are some functions of proteins?
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*enzymes
*hormones
*structural components
*secretions
*lubrications - What is the protein function of hormones?
- to regulate and influence metabolic activities
- What are some protein structural components and their purposes?
- hair, nails, organelles, bound molecules (like hemoglobin) and fibers; for the purpose of protection, contraction (muscle and cell movement), buffering, and transportation
- What is the protein function of antibodies?
- to act in the immune system and clotting factors
- What is the protein function of enzymes?
- to catalyze chemical rxns
- What is the structure of enzymes?
- globular protein
- How do enzymes catalyze chemical rxns?
- by lowering the Activation Energy, which is the energy required to start a spontaneous rxn
- What is a substrate?
- the reactant that an enzyme is acting upon
- How do you activate an enzyme?
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Step 1: substrate molecule binds to active site
Step 2: enzyme changes conformation (shape) to bind better to substrate molecule- This is called Induced Fit!
Step 3: binding causes chemcial rxn to occur - How can an enzyme be suppressed by competitive inhibition?
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Step 1: molecule other than substrate binds to active site
Step 2: substrate molecule cannot bind to enzyme
Step 3: chemical rxn does not occur in real time - How can an enzyme be suppressed by allosteric inhibition?
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Step 1: molecule other than substrate binds to allosteric site on enzyme
Step 2: enzyme changes conformation
Step 3: active site changes conformation
Step 4: stubstrate can no longer fit in the active site
Step 5: chemical rxn cannot occur in real time - What factors affect enzymes?
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*pH
*temperature
*ion concentration
*enzyme inhibitors - What cofactors affect enzymes?
- minerals and vitamins
- What are nucleic acids composed of?
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*DNA, RNA, and parts of ATP
*polymers of monomers called nuceotides - What are nuceotides composed of?
- phosphate group, pentose sugar, nitrogenous base
- What is DNA (deoxyribonucleic acid) composed of?
- sugar-deoxyribose and nitrogenous bases of adnine (a purine), guanine (a purine), cytosine (a pyrimidine), and thymine (a pyrimidine)
- What is the function of DNA?
- stores inherited info for protein synthesis
- What is RNA (ribnucleic acid) composed of?
- sugar-ribose and nitrogenouse bases of adenine (a purine), guanine (also a purine), uracil (a pyrimidine), and cytosine (a pyrimidine)
- What are the types and functions of RNA?
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mRNA (messenger)- carries genetic info to protein synthsizing machinery
rRNA (ribosomal)- synthesizes proteins
rRNA (transfer)- carries amino acid to rRNA - What is ATP composed of?
- adenosine triphosphate, sugar-ribose, and nitrogenous base of adenine, plus the triphosphate tail
- What is the function of ATP?
- to power cellular work by coupling endergonic and exergonic rxns
- Eukaryote DNA is associated with what?
- proteins called histones
- During cell division, what is the relation of DNA to histones?
- it winds tightly around histones so that it is visible
- What are chromosomes?
- the visible strands of DNA wound around histones
- What is chromatin?
- the diffuse form of DNA not wound around histones
- What is a gene?
- the discrete unit of hereditary information
- In DNA, what is the relationship between purines and pyrimidines?
- a purine will always bond to a pyrimidine
- What are base pairs?
- the binding patterns
- (A-T)
- adenine binds to thymine
- (C-G)
- cytosine binds to guanine